Archive for the ‘BioPython’ Category
Saturday, July 5th, 2008
We are pleased to announce the release of Biopython 1.47.
This release includes a new Bio.AlignIO module, updates to Bio.Blast, parsers for NCBI's Entrez E-Utilities, numerous other code improvements and fixes, and an extended and updated documentation. In particular if you use Biopython to access NCBI's E-Utilities, we encourage you to ...
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Saturday, March 22nd, 2008
We are pleased to announce the release of Biopython 1.45.
This release includes numerous code improvements and fixes, including in Bio.Seq, Bio.SeqIO, Bio.Entrez, Bio.PopGen, Bio.SwissProt, Bio.Cluster, Bio.SCOP, Bio.InterPro, Bio.GenBank, Bio.ExPASy, BioSQL, and the Biopython documentation. Too many to list them all here!
Source distributions and Windows installers are available from the Biopython ...
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Sunday, October 28th, 2007
We are pleased to announce the release of Biopython 1.44.
This release includes lots of code improvements and fixes in the Blast interface and parsers, sequence input/output, the SwissProt parser, the clustering routines, as well as a brand new module for population genetics. For reasons of compatibility, some radical changes were ...
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Saturday, March 17th, 2007
We are pleased to announce the release of Biopython 1.43.
This release includes a brand-new set of parsers in Bio.SeqIO by Peter Cock for reading biological sequence files in various formats, an updated Blast XML parser in Bio.Blast.NCBIXML, a new UniGene flat-file parser by Sean Davis, and numerous improvements and ...
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Sunday, July 16th, 2006
Dear biopythoneers,
We are pleased to announce the release of Biopython 1.42. This release includes a brand-new Genbank parser in Bio.GenBank by Peter Cock, numerous updates to Bio.Nexus by Frank Kauff and to Bio.Geo by Peter, lots of bug fixes by scores of contributors through BugZilla, and Bio.Cluster became object-oriented.
Source distributions ...
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Saturday, October 29th, 2005
We are pleased to announce the release of Biopython 1.41. Many improvements were made in Biopython during the eight months since the previous release, and the new release contains lots of bugfixes, improvements, new functionalities, and better documentation. To pick a few, there's the new Bio.MEME module by Jason Hackney, ...
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Thursday, February 24th, 2005
We are pleased to announce the release of Biopython 1.40 beta. It has
been nine months since the last official release (1.30), and there are numerous
changes, bugfixes, enhancements, goodies and new contributors. Most
notable are the addition of the Nexus parser (Frank Kauff w/ Cymon Cox), the CAPS module (Jonathan Taylor), ...
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Friday, May 14th, 2004
I'm happy to announce a new release of Biopython 1.30, available
today from http://biopython.org. This release contains a number of
new modules and substantial changes to older modules. As a result of
the changes, we've bumped up to a brand new major number. Please do
download, test with your code, and report any bugs ...
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Wednesday, February 18th, 2004
BioKnoppix is a new live CD linux, based on
KNOPPIX, with EMBOSS 2.8.0, jemboss, artemis, clustalx, Cn3D, ImageJ, BioPython, Rasmol, Bioperl, Bioconductor. It being made available by The University of Puerto Rico High Performance Computing facility (HPCf) and the Puerto Rico Biomedical Research Infrastructure Network (BRIN-PR). Great stuff!
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Tuesday, February 17th, 2004
I'm happy to announce the 1.24 release of Biopython. As normal Biopython is available from http://biopython.org.
The major changes in this release, in addition to the usual bug fixes, are:
New parsers for Phred and Ace format files -- thanks to Frank Kauff
New Code for dealing with NMR data -- thanks to ...
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